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I think the article is misleading. The studies don't seem to show that SLS causes canker sores, but if you do suffer from them, it will exacerbate them or delay their healing. The article says "studies", while only citing one study, that actually recruited patients who already suffered from the sores. A double blinded cross-over trial concluded that "The number of ulcers and episodes did not differ significantly between SLS-A, SLS-B, and SLS-free. Only duration of ulcers and mean pain score was significantly decreased during the period using SLS-free. Although SLS-free did not reduce the number of ulcers and episodes, it affected the ulcer-healing process and reduces pain in daily lives in patients with [canker sores]." Although I don't have access to the full version, so I can't view the details. By the way, SLS-A was an SLS-free toothpaste spiked with 1.5% SLS, and SLS-B was a commercially available toothpaste with 1.5% SLS in it already.
You can tell that the article is trying to sensationalise something by such phrases as:
"But there’s no reason to accept a hazardous chemical in your toothpaste." You know what else is in your toothpaste? Sodium fluoride. Which is lethal at high enough dose. It's all about the concentration.
"It’s strong stuff — the cleaning solution I use on our garage floor is 50% SLS." Well, yes, if you use it at concentrations ridiculously above the ones found in a toothpaste, of course it's going to be "strong stuff". You know what else is strong stuff? 100% acetic acid. Yet somehow, at 10% we happily consume it as vinegar. By the way, vinegar - great cleaning agent!
Don't get me wrong, if you're sensitive to SLS, by all means avoid it. But I'm not a fan of articles that make blanket statements about a chemical that is mostly harmful in the concentration that it's used in hygiene products. It's another one of those "aspartame gives you cancer" (which it doesn't by the way).