I thought id give flatpak firefox a shot and the profiles are broken. I might be able to fix it by making some symlinks but it left a bad taste in my mouth. I was unable to get it to recognize my userChrome.css
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Lots, LOTS, TL;DR - flatpaks are sandboxed and work on every* distro out there, while apt packages are not and only work on debian and it's derivatives. I'd say on mint or debian, prefer using flatpaks over apt packages as you're usually gonna get newer versions of software.